CHUN LI, PH.D.

Assistant Director for Education

Chun Li, Ph.D. is an Asso­ciate Pro­fes­sor of Population and Quantitative Health Sciences.  He has exten­sive expe­ri­ence in sta­tis­ti­cal genet­ics research and genetic data analy­sis.  He is cur­rently work­ing on devel­op­ing meth­ods for detect­ing somatic changes using next-generation sequenc­ing data.  He is also inter­ested in devel­op­ing meth­ods to effi­ciently mine elec­tronic med­ical records.  Active in col­lab­o­ra­tive research, he has been work­ing with inves­ti­ga­tors in var­i­ous fields such as can­cer epi­demi­ol­ogy, clin­i­cal phar­ma­col­ogy, oph­thal­mol­ogy, car­dio­vas­cu­lar dis­ease, autism, type 2 dia­betes, etc.  He has pub­lished in Nature Genet­ics, New Eng­land Jour­nal of Med­i­cine, Blood, Amer­i­can Jour­nal of Human Genet­ics, Bioinformatics, etc.

Affiliations

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Recent Publications

  1. Kim, J, Cui, Y, Nam, KH, Lee, JW, Kim, JG, Chun, SJ. Effects of CP4-EPSPS-Containing Brassica juncea Hybrids on the Gut and Fecal Microbiota of the Terrestrial Decomposer Armadillidium vulgare. Microb Ecol 2025; 88 (1): 131. PubMed PMID:41288747 .
  2. Gopal, AB, Mahadevaiah, T, Chun, A, Giles, L, Merlin, T, Murthy, TA. Impact of higher enteral protein delivery on gastrointestinal dysfunction in critical illness: A systematic review and meta-analysis. JPEN J Parenter Enteral Nutr 2025; : . PubMed PMID:41287343 .
  3. Lee, NJ, Hassan, FM, Shi, T, Ferraro, A, Cooney, M, Hung, CW, Roth, SG, Scheer, JK, Sardar, ZM, Lombardi, JM et al.. Exploring the indications, failures, and treatment of complications after a C2 to pelvis fusion. Spine Deform 2025; : . PubMed PMID:41286544 .
  4. Abedi, M, Expòsit, M, Coventry, B, Mathew, D, Jain, S, Krishnakumar, A, Goreshnik, I, Gray-Gaillard, SL, Lunn-Halbert, M, Yu, TY et al.. High-Throughput De Novo Protein Design Yields Novel Immunomodulatory Agonists. bioRxiv 2025; : . PubMed PMID:41279583 PubMed Central PMC12632978.
  5. Luquette, LJ, Coorens, THH, Natu, A, Suvakov, M, Caplin, A, Jun, MS, Mo, A, Pelt, J, Anderson, L, Berselli, M et al.. A comprehensive view of somatic mosaicism by single-cell DNA analysis. bioRxiv 2025; : . PubMed PMID:41279272 PubMed Central PMC12637448.
  6. Ha, YJ, Maziec, D, Markowski, J, Georges, SJ, Parmalee, NL, Berselli, M, Coorens, THH, Dong, S, Gardiner, S, Kalra, D et al.. Comprehensive benchmarking of somatic single-nucleotide variant and indel detection at ultra-low allele fractions using short- and long-read data. bioRxiv 2025; : . PubMed PMID:41278982 PubMed Central PMC12632906.
  7. Wang, S, Bae, M, Wang, J, Zhao, B, Nguyen, K, Mallett, S, Switzenberg, JA, Losh, SJ, Sexton, CE, Miao, B et al.. Multi-platform framework for mapping somatic retrotransposition in human tissues. bioRxiv 2025; : . PubMed PMID:41278868 PubMed Central PMC12632373.
  8. Shin, E, Kim, SI, Park, MH, Kim, HA, Jung, Y, Ryu, JM, Park, EH, Kim, SY, Lee, EG, Lee, MH et al.. Correction: Comparative study on bone mineral density in premenopausal patients with estrogen receptor-positive breast cancer in ASTRRA Study: a 5-year follow-up study. Front Oncol 2025; 15 : 1729229. PubMed PMID:41278270 PubMed Central PMC12635617.
  9. Wenzel, M, Lauer, B, Burdenski, K, Tselis, N, Rödel, C, Brandts, C, Ahrens, M, Köllermann, J, Graefen, M, Humke, C et al.. Influence of PSA level at salvage radiotherapy on metastasis-free survival following radical prostatectomy. World J Urol 2025; 43 (1): 713. PubMed PMID:41272134 PubMed Central PMC12638372.
  10. Kim, TH, Chun, JW, Woo, SM, Chung, JH, Lee, MH, Han, SS, Park, SJ, Lee, SU, Suh, YG, Moon, SH et al.. Impact of treatment sequence and dose response on outcomes in locally advanced pancreatic cancer treated with hypofractionated proton beam therapy using simultaneous integrated boost technique. Radiother Oncol 2025; 214 : 111295. PubMed PMID:41271172 .
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